kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)

I Did Not Finish it with sufficiently extreme prejudice that I sent it back to the library and myself to the back of a multiple-months-long hold queue if I decide I do want to subject myself to more of it.

Read more... )

kaberett: Trans symbol with Swiss Army knife tools at other positions around the central circle. (Default)

... and leads with an explanation of "opponency" that I did not quite manage to follow, for reasons that have more to do with typesetting of the ebook than anything else, but which problem I addressed by Visiting Wikipedia.

The wikipedia page on opponent process begins

The opponent process is a color theory...

... and indeed when my eyebrows raised and my eyes flicked over to the table of contents, I was unsurprised to see a section titled "Criticism".

All of which led inexorably on to impossible colors and, delightfully, the line of purples.

Yong has not thus far (I am a little under halfway through the chapter) even gestured vaguely in the direction of the immediately-obvious-to-me-from-the-opening-sentence-on-wikipedia Controversy about opponency, which means that I (i) have no idea and (ii) am poorly equipped to judge how this particular Controversy compares with The Controversy About Mantle Plumes wherein the small number of people who think thermal convective upwellings Aren't What's Going On for a long time were also the only people who cared about the wikipedia page on mantle plumes, which has at some point in the last decade been extensively edited to reflect actual current scientific consensus. Which in turn means that I am unsure how large a grain of salt to take with everything else Yong says!

Meanwhile,

Our [human] lenses typically block out UV, but people who have lost their lenses to surgeries or accidents can perceive UV as whitish blue. This happened to the painter Claude Monet, who lost his left lens at the age of 82. He began seeing the UV light that reflects off water lilies, and started painting them as whitish blue instead of white.

kaberett: A very small snail crawls along the edge of a blue bucket, in three-quarters profile with one eyestalk elegantly extended. (tiny adventure snail)

There are thousands of different animal opsins, but they are all related.* Their unity creates a paradox. If all vision relies on the same proteins, and if those proteins all detect light, then why are eyes so diverse? The answer lies in light’s distinct properties. Since most light on Earth comes from the sun, its presence can hint at temperature, time of day, or depth of water. It reflects off objects, revealing enemies, mates, and shelter. It travels in straight lines and is blocked by solid obstacles, creating telltale features like shadows and silhouettes. It covers Earth-scale distances almost instantaneously, offering a fast and far-ranging source of information. Vision is diverse because light is informative in a multitude of ways, and animals sense it for myriad reasons.

* In 2012, evolutionary biologist Megan Porter compared almost 900 opsins from different species, and confirmed that they share a single ancestor. That original opsin arose in one of the earliest animals and was so efficient at capturing light that evolution never conjured up a better alternative. Instead, the ancestral protein diversified into a wide family tree of opsins, which now underlie all vision. Porter draws that tree as a circle, with branches radiating outward from a single point. It looks like a giant eye.

kaberett: Trans symbol with Swiss Army knife tools at other positions around the central circle. (Default)

Okay, I have only got a very little further with this book, but Footnote Number Three to Chapter One made me make a noise with my face.

In a discussion about olfaction, and specifically quantifying how good various species are at it:

I've deliberately avoided putting hard numbers on the scale of these differences. It is easy to find estimates, and very hard to find primary sources for them;; after an hours-long search that included a scientific paper that sourced a factoid to a book in the For Dummies series, I fell into an existential void and questioned the very nature of knowledge. Regardless, the differences are there, and they're substantial; it's only a question of exactly how substantial they are.

Part of the reason it is slow going is that there are A Fair Few Footnotes; they're Good (see above); and because this is a library loan I am reading via Libby on my phone, which handles footnotes in a way I'd be (or at least think I was) fine with if my ereader weren't so much better at it.

The other part is that I keep getting distracted by following up references. e.g. a fifteen-minute trawl prompted by Footnote Number 12:

... Noam Sobel, a neurobiologist who studies olfaction, has come closer than anyone else to wrangling this complexity [of trying to predict how any given molecule will smell, and how mixtures will smell, and so on and so forth]. While I was writing this book, he and his team developed a measure that analyzes 21 features of odorant molecules and collapses these into a single number. The closer this smell metric is for any two molecules, the more similar their odors. This isn't quite the same as predicting scent from structure, but it's the next best thin--predicting scent from similarity to other scents.

This parameterisation (?) of scent is a 2020 Nature article. Earlier work, published in PNAS 2012 and covered in an informal article by Nature discusses "olfactory white", toward which mixtures of odorants tend -- think white noise or white light.

Alas this trawl also turned up a New Scientist article in which the guy is claimed to have asserted that scent has an important role to play in Women Synchronising Their Menstrual Cycles (which, uh, by 2015 -- when the NS article was published -- had... had its existence as a phenomenon called into question), but I'm inclined (having thus far done nothing more involved than skimming the first sentences of abstracts) to suspect him of common or garden misogyny, of a form that's unlikely to significantly bias the results his group reports over and above the extent to which, you know, Existing In A Society does.

So I'm heading back to Ed Yong! With some new-to-me perfume nerd thoughts sloshing gently around my head.

kaberett: Trans symbol with Swiss Army knife tools at other positions around the central circle. (Default)

In the run-up to my viva I decided that the nicest way to make my totally spurious personal-use-only hard copy of my thesis would be using a £90 hole punch, so I stacked up some discount codes and bought into the Atoma disc-binding system. Obviously, when you have a £90 hole punch you bought for a single specific purpose, you fairly rapidly discover that you are in possession of a solution looking for problems.

Happily, Admin: the LRP presents no shortage of problems.

... or, more helpfully: after the first event of 2022, we decided that we could do a little bit better in terms of issue-tracking than my horrible scribbled bits of torn paper, and designed and set up a whole entire analogue ticket system based on query slips!

Background. So much background. )

For convenience, I have taken to collating like query slips we'll probably want to refer back to during the event (the background above; lost property; found property; ...) into disc-bound booklets. Alas, "white paper someone's scribbled all over" doesn't really stand out much from The Chaos; happily, this gives me an excuse to make FLUORESCENT NOTEBOOK COVERS with the contents written on the front in BIG FRIENDLY LETTERS.

Because reasons, I had a stack of fluorescent cardstock -- pink and orange and yellow and green. The thing is, though, that Admin: the LRP has A Colour Scheme. That colour scheme is Royal Blue. Obviously, therefore, I wanted some obnoxiously loud fluorescent blue cardboard.

... I was a frankly embarrassing way into tediously unedifying search results before it occurred to me to double-check how fluorescence actually works.

To first approximation, things are colours because they absorb all the visible wavelengths of light except the one they appear to be, which they reflect back to you more-or-less unaltered. Per wikipedia:

Fluorescence is the emission of light by a substance that has absorbed light or other electromagnetic radiation. It is a form of luminescence. In most cases, the emitted light has a longer wavelength, and therefore a lower photon energy, than the absorbed radiation ... Strongly fluorescent pigments often have an unusual appearance which is often described colloquially as a "neon color" (originally "day-glo" in the late 1960s, early 1970s). This phenomenon was termed "Farbenglut" by Hermann von Helmholtz and "fluorence" by Ralph M. Evans. It is generally thought to be related to the high brightness of the color relative to what it would be as a component of white. Fluorescence shifts energy in the incident illumination from shorter wavelengths to longer (such as blue to yellow) and thus can make the fluorescent color appear brighter (more saturated) than it could possibly be by reflection alone.

... oh, I realise, belatedly. Oh. Er. Fluorescent blue is not really a thing in most contexts... because blue light is the shortest wavelength in the visible spectrum... so since fluorescence works by converting shorter-wavelength light to longer-wavelength light... fluorescent blue only really works if you've got lots of UV bouncing around the place... whiiich isn't something that happens very much in domestic indoor settings so it er isn't surprising that (i) there isn't much demand for it, and (ii) fluorescent green is the shortest-wavelength colour that's trivially available on cardstock.

And so! I have resigned myself to making do with the colours I already have available (I've been doing some clearing out of Stuff from my parents', and a giant stash of 90s kids' stationery has mostly gone on Freecycle, but a few bits of it I kept), and as consolation have a bit more of an understanding of How Colours and How Lights, and on the whole I think this is a fair trade.

kaberett: Trans symbol with Swiss Army knife tools at other positions around the central circle. (Default)
As you might have guessed, this week I have been Having More Migraines. (I am starting to grimly resign myself to spending the majority of my time between now and at least July in migraine. I am planning to stick it out another month on the current "preventative" just so that I have ruled it out as thoroughly as possible, but. But.)

Reading. Black and British, David Olusoga. So far, this is excellent.

The Dark Archive, Genevieve Cogman. So far, this is exactly as trashy as I expected.

And a little bit also of the Silm!

Watching. Lots of the 2022 Migraine World Summit, which [personal profile] lireavue first flagged up to me and [personal profile] ewt subsequently reminded me of at an opportune moment. I am mildly annoyed that I missed the first day's session on The Latest New Treatments for Migraine -- the way this works is that the cut-down 30-minute interviews are available for free for 24 hours and then paywalled, and I hadn't quite got my head around when the 24 hour period in question was going to end -- but I think I'm picking up lots of the detail from other conversations. I am learning a lot, and currently mostly digesting. More to follow, perhaps, but I think my favourite thing so far has been Messoud Ashina, talking about setting up a ten-step approach to diagnosis and management of migraine, saying:
Well, there was some years ago -- in fact inspired by some of my junior scientists -- I was told that, uh, why don't we do ten steps for migraine? Because they found, ah, literature on other diseases, and they said, well, this is something we're missing, and you know, if you want to be, erm, let's say, contemporary, you have to listen to what your junior scientists are telling you. And they say that this is something missing, and you have to look at it. At first I said well, I'm too busy, about that, but they say no, you have to read some literature. Then I read the literature and, ah, must admit that I was impressed by their persistence, and I say, well, let's do it.

Playing. We finished Samarost 3, with only a relatively small proportion of the achievements, and Continued Baffled by quite a lot of it. OH WELL. Hopefully they will keep making more games!

I also had an Among Us session with my cousins, for the first time in Ages, and we were baffled and mildly alarmed by the number of changes and expansions that have been made. I ended up very glad we'd scheduled it for the early-evening slot -- my bonus extra unscheduled migraine showed up just as other people were needing to wrap up anyway, and by the time of the late-evening slot I was entirely incapacitated. SO.

We also played a very little of Epistory together, A and I, but it turns out to be sub-optimal for coplay, so probably we are going to do it separately. (Or maybe I will watch A finish playing it for the story.)

I got today's Wordle in two moves, thanks to a starting word that locked the last two letters in for me.

Cooking. Big batch of Käsespätzle tonight, which will hopefully last us several days. A big pan of Tiroler Gröstl (vegetarianised), also at A's request. And, mid-week, also a big batch of vegetarian (lentil) bolognaise, some of which we ate and some of which is frozen to be emergency future food.

Making & mending. I got the greenhouse frame mostly back together. I still need to get the skylights back onto the roof ridge, and then actually bolt the roof ridge in place (okay and check whether the door runner needs replacing), but I think I'm probably getting away without replacing any of the frame. Which is a relief.

... clean-up of the safety glass... continues a Work In Progress.

Growing. Shallots are also coming up, once I'd finally mostly despaired of them! Patio plants are continuing to produce lots of leaves! The broad beans all seem to have been eaten, bah, but the strawberries are doing okay.

(I am hoping I'll be able to get out to the plot several times this week, and thus have more progress to report, but alas that's extremely "migraines permitting", as is so much of the rest of my life...)
kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)
Okay. So. I spent last night miserably insomniac and this morning wretchedly fatigued (and this evening nursing a migraine), BUT, A came through to the bedroom -- blinds (Venetian & blackout) down, lights off, etc -- to encourage me upright for lunch, and handed me my post.

It was dark. I was groggy. I had woken up from a deeply disorienting dream and had not quite fought my way clear of it yet. I was definitely feeling Off.

And I started opening the envelope, and it glowed purple at me.

I was startled, and alarmed, and more than half-convinced that I was hallucinating, but then I gingerly tried again and the same thing happened.

I wailed in dismay to Adam.

Adam was mildly surprised I'd never previously observed this, and presented me with a wikipedia page.

Apparently! I have probably! been getting letters that produce an Eldritch Purple Glow all along! but because, for obvious reasons, I mostly don't open my post in the dark, I was blissfully unaware of this fact! AND NOW I AM NOT. You're welcome.
kaberett: Toph making a rock angel (toph-rockangel)
A couple of weeks ago, A took me into central London. We packed everything still in my desk at work into a couple of bags, and then we went to the zoo.

I have now got around to taking... most... of the Stuff out of said bags, and once again am wailing and gnashing my teeth about Needing More Shelf Space even after I dumped a good kilo or two of paper in the recycling. One of the things I did manage to tidy away, though (for some value of "tidy") is my molymod set. I tucked it under the monitor stand on my half of the desk in the study and wandered off...

... and a little while later wandered back to find that A had at some point, presumably in some meeting or other, Helped Himself To It and started building molecules.

Which is to say: I considered inviting him to play with it but decided that he'd probably get to it regardless so didn't bother making it explicit, and now I get to explain organic chemistry to him. Like: why do the nitrogens have options for four bonds? So, obviously, I've now talked him through the Bohr model (which was revision) and dot and cross diagrams (which weren't) and what orbitals as in electron probability densities look like and Why The Periodic Table Is Like That (feat. printing one out and cutting it up) and, briefly, at the end of this evening's infodumping, Why Graphite Is Electrically Conductive.

I am having great fun. And I am only slightly considering finally shelling out for the molymod orbitals kit...
kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)
So I have been ignoring... pretty much everything... that wasn't directly related to Thesis Shit (or The Paper)... in my work inbox... since about November, with the result that I'd got up to ~2.2k e-mails unread as of hand-in.

It is now back down to 990 (because I have been skimming, but also limiting myself to a target of 100 and a maximum of 200) for the past week, with several surveys filled out and... several... papers open to read in tabs and a lot of skim-reading of lively discussions on academic mailing lists.

So far, my favourite is the demonstration that going for a jog leaves you isotopically heavier: Read more... )

(Actually reading the backlog of papers, and indeed catching up on recordings of a workshop I managed to sleep through, is a job for next week...)
kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)
Okay. So. For reasons! That are probably fairly obvious! While rummaging around on the internet! I stumbled across Isomorphic Relationship between Rubidium and Thallium in Igneous Minerals (Ahrens 1945), thought "oh shit why didn't I know about this paper?" and clicked through to the pdf.

  1. Turns out I didn't know about this paper because it's actually about one column, and is essentially the conference-abstract version of Ahrens (1948).
  2. But. As someone who compulsively reads any text in front of them. My eye was inexorably drawn. To the material that filled the rest of the column. Entitled Distribution of Wars in Time (Richardson 1945). I reproduce the text beneath the cut, for your convenience.


Read more... )

hope

Feb. 18th, 2021 10:25 pm
kaberett: a watercolour of a pale gold/salmon honeysuckle blossom against a background of green leaves (honeysuckle)
Perseverance is safely down on Mars, which we watched a little of, from final prep for atmospheric entry to the first photos; I always cry, and I always forget I'm going to, and I'm very glad.

Rather closer to home, over the course of the evening I've got my chillis various sown and into the propagator. I'm excited for them to hatch. I'm excited to see them grow.

And the closer-to-home science ticks along, working, as well.
kaberett: Trans symbol with Swiss Army knife tools at other positions around the central circle. (Default)
(1) Paper has been handed back to the appropriate editor, which was the next step in the relevant process.

(2) Triptans do in fact make a positive identifiable difference (and this is true even if the first dose didn't seem to work).

(3) We have had three days of afternoon-tea-and-cake, from the selection of Ottolenghi cakes that came home with us on Saturday, and it's been properly lovely to have An Tea Break of that ilk. I am contemplating what things I'm interested in baking are good options for continuing this pattern (given that some of the pleasure has been in the variety, which isn't really achievable when there's, well, two of you and one large cake).

(4) Supervisor meeting this afternoon v productive. I have successfully convinced them that I'm at least right enough about [core point of scientific disagreement], which means that while I need to shuffle bits of chapter 5 around and also shove more explanatory figures in it is basically all there (!).

(5) And then [personal profile] sciatrix very kindly held my hand through doing some Actual Statistics (Sorta), and the first-pass result is Promising though I need to do some more detailed breakdowns at a point when I do not appear to be having my second migraine in three days.

(6) I successfully got the problematic ebook onto my ereader! By dint of booting up my Windows partition, which is extremely What Even but lends credence to the idea that whatever is going on with my wine-flavoured ADE is some form of IE version fuckery. But the point is that the relevant ebook that I bought is now on my ereader, and I have lots of things to roll around in excitedly.

(7) I have blocked The Shawl. There are a couple of bits I'm slightly unhappy with and contemplating having another fine-detail go at, but -- it is in essence ready to pack up and send off, which I am very excited about. Ravelry says I've been working on it intermittently since January 2016, so, you know, maybe now I have this particular object finished I will start knitting more again!

(8) Made a big vat of veg stew yesterday, and A has been making DUMPLINGS to go in it, and I am enjoying this very much.

(9) I have remote-watching a film with The Cousins Various in the diary for this weekend, and I am definitely looking forward to it (... and should work out what to bake for us for that, hmm).

(10) aaaaaand being curled up warm in pyjamas and a hoody is also good. thank you and good night.
kaberett: Reflections of a bare tree in river ice in Stockholm somehow end up clad in light. (tree-of-light)
A conference abstract entitled The geochemical composition of frost flowers in the Alaskan Arctic and their role in mercury deposition.

(Today I have mostly been wrestling with LaTeX, after A found me subfiles when I was having a panic last night; I need to unfuck page numbering and of course there's Always More Words one could write and also I need to work out how to make stable references to the appendix that's going to exist as a spreadsheet, but -- the skeleton of the thing and the introduction is now in situ, and I maybe cried a bit about being someone who is really actually in the process of making a thesis.)
kaberett: Photo of a pile of old leather-bound books. (books)
I'm pretty sure I've previously linked to the moths that scream at bats to make them go away, except of course they're not actually Doing A Screm: they're vibrating membranes on their abdomen.

I mentioned this to [personal profile] simont the other day, and he went "wait they scream?" and I was forced to add the disclaimer above... and then I poked the internet and found, uh, Vocalization in caterpillars: a novel-sound-producing mechanism for insects:
Insects have evolved a great diversity of sound-producing mechanisms largely attributable to their hardened exoskeleton, which can be rubbed, vibrated or tapped against different substrates to produce acoustic signals. However, sound production by forced air, while common in vertebrates, is poorly understood in insects. We report on a caterpillar that ‘vocalizes’ by forcing air into and out of its gut.
kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)
Important Science Question, said [personal profile] sebastienne yesterday. Do batteries weigh more when they're fully charged?

"... what?" thought I. "N- nnnnno? Why would they? You're just shifting electrons around, right?"

But I felt a twinge of unease about this, so I did the internet a quick search, and the internet very rapidly informed me that the answer is yes, because E = mc2, innit. If the battery's got more energy in it, it's more massive. Not a lot more massive! But excited electrons Weigh More. They Just Do.

This is approximately the point at which I bluescreened.

As best I can tell -- and you must understand that this is a reconstruction after the fact -- my issue here is twofold.

Part the first: I am currently paid good money to spend a lot of time thinking about small relative differences in mass between atoms, and the effects of same on chemical (and other) behaviour. It is, insofar as I have a job, Literally My Job.

And we just... ignore the electrons. I mean, I care a very little about whether my thallium atom is neutrally charged, or in the 1+ or the 3+ state, but mostly because of what that does to the chemistry; in terms of what it does to the mass, I have been blithely completely ignoring it.

In a context, right, of "we only got good enough at instrumentation to even detect these differences for thallium in the late 90s" (i.e. around the time I had discovered Stimming With Velcro, and deliberately began cultivating tiny handwriting, and was excluded from a lesson I really didn't want to participate in because I'd been reading a book instead of listening... so got to keep reading a book in the corridor, and was Very Distressed about colour saturation) -- like, for all possible practical purposes, Electrons Don't Weigh Anything, and I've been slowly but steadily internalising this as an unexamined-to-the-point-of-axiomatic Truth about the world for at least, er, the past six years.

The second part is that I have no memory of, at any point during any of my undergrad chemistry lectures, when we were sketching graphs of potential wells and generally fucking about with electron excitation and spin states and so on and so forth, ever having anyone say "oh, by the way, excited electrons weigh more", even though that seems to me an obvious and straightforward Way To Upset The Undergraduates.

I mean. Maybe I knew this during A-level physics? Maybe I've just forgotten since?

But I was very upset about it on the way to sleep last night, which Adam seemed to find hilarious. If somewhat disconcerting that, in contrast, I don't have any issue with the concept of light having mass. "It's just," I sort-of-attempted-to-explain, plaintively, "that I've spent so long assuming a perfectly spherical cow on an infinite frictionless plane--"

"-- moo?"

"COWS CANNOT MOO," I protested.

"... Alex," says the Adam patiently (or something to this effect; I was quite sleepy) "... it... is in the fundamental nature of cows... to moo."

"NO IT ISN'T," I wailed, "THEY CAN'T. THEY'RE PERFECT SPHERES."
kaberett: A series of phrases commonly used in academic papers, accompanied by humourous "translations". (science!)
The link to an NPR article on Newly Discovered Auroral Form has been doing the rounds (with an especial hat-tip to [personal profile] redbird, who provided the version I finally mustered the executive function to click on), and includes an onward link to the publication itself (open access), which I have been finding just charming. Five of the 13 authors have their affiliation listed (in the PDF) as "Citizen Scientist, Finland", which is exactly right and proper and as it should be and has been giving me warm fuzzies all day.

I just. The sheer delight:
On 7 October 2018, the auroral watchers spotted the dunes again, this time marking the start of a detective story uncovering the physics the dunes represent. We organized an ad hoc campaign in the evening of 7 October 2018, where the scientists and the citizen observers from different parts of Finland were in real‐time connection. As a result, we gained several consecutive and simultaneous pictures with calibrated camera clocks throughout Finland. These pictures, presented in this paper, formed the backbone of this study.
kaberett: Photo of a pile of old leather-bound books. (books)
that's two nights running (I think? or maybe there was another night in between, I'm not sure) that I've had A Sudden Flash Of Scientific Insight as I'm extremely horizontal in bed, actually on my way to warm and asleep, with zero intention of emerging even so far as to make a note on my phone...

... and not only have I remembered it in the morning, but it's actually been any use.

Why -- here comes the grumble -- why, I ask you, doesn't this work for poetry.
kaberett: Toph making a rock angel (toph-rockangel)
This morning, at around a quarter past nine, having been in work for an hour and a bit, I decreed myself Done For Now and left the basement and pootled down to the station in the sunshine and got myself an almond croissant.

And then ate it, still outside and in the sunshine, while sorting out MY DATA.

Read more... )

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